[notes] More Is Better: Recent Progress in Multi-Omics Data Integration Methods
For essays that shed light on the background and present research, it is relatively easy to make the structure apparent to the audience. However, it is not q...
Posts by Tag
- Academic Writing 2
- Multi-Omics 2
- Debug 1
- Muti-Omics 1
- Simulator 1
- Statistical Test 1
- Probability 1
- Trivia 1
- R 1
- Visualization 1
- High-Dimensional 1
- Rare Variants 1
- Genetics 1
- Parkinson's Disease 1
- Microbiome 1
- Longitudinal Data 1
Academic Writing
Excerpt Collections for Writing
Some elegant expressions I came across through reading.
Multi-Omics
[paper] Design, Processing, and Modeling for Longitudinal Multiomics Microbiome Data Permalink
Our mini review is out in Frontiers in Cellular and Infection Microbiology! Written with Margaret Thairu and Kris Sankaran, it is a practical guide to analyz...
[link] Check out our New R Package! Permalink
MolPad: An R-Shiny Package for Cluster Co-Expression Analysis in Longitudinal Microbiomics
Debug
[link] How to fix the remote disconnected error in Github Desktop Permalink
Best solution I got from stack overflow to fix the error: “the remote disconnected. check your internet connection and try again”
Muti-Omics
[notes] More Is Better: Recent Progress in Multi-Omics Data Integration Methods
For essays that shed light on the background and present research, it is relatively easy to make the structure apparent to the audience. However, it is not q...
Simulator
[notes] A single-cell count data simulator with correlations captured
scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations captured
Statistical Test
Wilcoxon Rank Sum Test
The Wilcoxon Rank Sum Test (Mann–Whitney U test)
Probability
Gaussian Copula
The name copula comes from the Latin for “link” or “tie”, as it literally means this model is used to describe the inter-correlation between random variables...
Trivia
Swamp, Bog, Mire, and Marsh
I was surprised to find that so many nature-related words in GRE vocabulary can be used metaphorically to describe all sorts of human experiences, even thoug...
R
[link] Check out our New R Package! Permalink
MolPad: An R-Shiny Package for Cluster Co-Expression Analysis in Longitudinal Microbiomics
Visualization
[link] Check out our New R Package! Permalink
MolPad: An R-Shiny Package for Cluster Co-Expression Analysis in Longitudinal Microbiomics
High-Dimensional
[notes] Inferring Change Points in High-Dimensional Linear Regression via Approximate Message Passing
This paper aims to address the problem of localizing change points in high-dimensional linear regression. Their major contribution is to put forward an Appro...
Rare Variants
[paper] Protein-Truncating Variants in UQCRC1 Are Associated with Parkinson’s Disease Permalink
Our paper on rare genetic variants and Parkinson’s disease (PD) is published in npj Parkinson’s Disease! We used exome sequencing data from about half a mill...
Genetics
[paper] Protein-Truncating Variants in UQCRC1 Are Associated with Parkinson’s Disease Permalink
Our paper on rare genetic variants and Parkinson’s disease (PD) is published in npj Parkinson’s Disease! We used exome sequencing data from about half a mill...
Parkinson's Disease
[paper] Protein-Truncating Variants in UQCRC1 Are Associated with Parkinson’s Disease Permalink
Our paper on rare genetic variants and Parkinson’s disease (PD) is published in npj Parkinson’s Disease! We used exome sequencing data from about half a mill...
Microbiome
[paper] Design, Processing, and Modeling for Longitudinal Multiomics Microbiome Data Permalink
Our mini review is out in Frontiers in Cellular and Infection Microbiology! Written with Margaret Thairu and Kris Sankaran, it is a practical guide to analyz...
Longitudinal Data
[paper] Design, Processing, and Modeling for Longitudinal Multiomics Microbiome Data Permalink
Our mini review is out in Frontiers in Cellular and Infection Microbiology! Written with Margaret Thairu and Kris Sankaran, it is a practical guide to analyz...